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Publications: 701 - 800

701."Stimulated Raman Spectroscopy with Femtosecond Optical or Attosecond X-Ray Pulses"
S. Mukamel, S. Rahav and H.T. Wang.
XXII International Conference on Raman Spectroscopy (ICORS) 1267, 109-110 (2010).
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702."Two Quantum Coherenes in Optical Two-Dimensional Fourier Transform Spectroscopy"
S.T. Cundiff, D. Karaiskaj, X. Dai, L. Yang, A.D. Bristow, M. Richter, R.P. Mirin and S. Mukamel.
In Ultrafast Phenomena XVII (Oxford University Press, New York),Pages 296-298 (2010).
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703."Coherent Control of Multidimensional Nonlinear Optical Signals with Shaped Laser Pulses"
D.V. Voronine, D. Abramavicius and S. Mukamel.
In Ultrafast Phenomena XVII (Oxford University Press, New York),Pages 805-807 (2010).
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704."Probing Amyloid Fibril Growth by Two Dimensional Near Ultraviolet (2DNUV) Spectroscopy"
J. Jiang and S. Mukamel.
J. Phys. Chem. B,115, 6321-6328 (2011).
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705."Novel Coherent Two Dimensional (2D) Optical Spectroscopy Probes of Chirality Exchange and Fluctuations in Molecules"
F. Sanda and S. Mukamel.
J. Chem. Phys.,135, 194201 (2011).
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707."Reconstruction of the Wavefunctions of Coupled Nanscoptic Emitters Using a Coherent Optical Technique"
M. Richter,F. Schlosser, M. Schoth S. Burger, F. Schmidt, A. Knorr,and S. Mukamel
Phys Rev Letters B, 86, 085308 (2012).
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708."Communication: Comment on the Effective Temporal and Spectral Resolution of Impulsive Stimulated Raman Signals"
J.D. Biggs and S. Mukamel
J. Chem. Phys.,134, 161101(2011).
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709.709."Dissecting bi-exciton wavefunctions of Self-assembled Quantum Dots by Double Quantum Coherent Optical Spectroscopy"
B. Fingerhut, M. Richter, J.W. Luo, A. Zunger, and S. Mukamel
JPhys Rev B, 86, 235303 (2012).
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710."Time-Symmetric Quantum Mechanics Questioned and Defended"
S. Mukamel
Physics Today, 64, 9+(2011).
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711."Special Issue, 60 Festschrift- Shaul Mukamel"
S. Mukamel
J. Phys. Chem. B, 115, 5037-5692 (2011).
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712."Coherent Nonlinear Optical Studies of Elementary Processes in Biological Complexes; Diagrammatic Techniques Based on the Wavefunction vs. the Density Matrix"
J. Biggs, J. Voll and S. Mukamel
Phil Trans Royal Society A, 370, 3709-3727(2012).
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715."Background-free Nonlinear Microspectroscopy with Vibrational Molecular Interferometry"
E.T. Garbacik, J.P. Korterik, C. Otto, S. Mukamel, J.L. Herek, and H.L. Offerhaus
Phys. Rev. Lett, 107, 253902-253906(2011).
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716."Deep UV Resonance Raman Spectroscopy of Beta-sheet Amyloid Fibrils; A QM/MM Simulation"
H. Ren, J. Jiang, and S. Mukamel
J.Phys. Chem. B, 115, 13955-13962(2011).
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717."Distinguishing Amyloid Fibril Structures in Alzheimer's Disease (AD) by Two-Dimensional Ultraviolet (2DUV) Spectroscopy"
A. Lam, J. Jiang, and S. Mukamel
Biochemistry, 50, 9809-9816(2011).
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718."Two-Dimensional Double-Quantum Spectra Reveal Collective Resonances in an Atomic Vapor"
X. Dai, M. Richter,H. Li, A.D. Bristow, C. Falvo, S. Mukamel, and S. Cundiff
Phys. Rev. Lett, 108, 193201(2012).
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719."Weak Exciton Scattering in Molecular Nanotubes Revealed by Double-Quantum Two-Dimensional Electronic Spectroscopy"
D. Abramavicius, A. Nemeth, F. Milota, J. Sperling, S. Mukamel, and H. Kauffmann
Phys. Rev. Lett, 108, 067401[5 pages](2012).
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720."Trapping Photon-dressed Dirac Electrons in a Quantum Dot Studied by Coherent Two-Dimensional Photon Echo Spectroscopy"
O. Roslyak, G. Gumbs, and S. Mukamel
J. Chem. Phys. 136, 194106(2012).
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721."Time, Frequency, and Wavevector Resolved X-ray Diffraction from Single Molecules"
K. Bennett, J. D. Biggs, Y. Zhang, K.E. Dorfman, and S. Mukamel.
J.Chem.Phys. 140, 204311(2014).
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722."Tracking the Mechanism of Fiber Assembly by Simulated Two-Dimensional Ultraviolet Spectroscopy"
A.R. Lam, J.J. Rodriguez, A. Rojas, H.A. Scheraga, and S. Mukamel
J. Phys. Chem.A, 117, 342-350 (2013).
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723."Exploring the Aggregation Propensity of ?S-crystallin Protein Variants Using Two-dimensional Spectroscopic Tools"
J. Jiang, K.J. Golchert, C.N. Kingsley, W.D. Brubaker, R.W. Martin, and S. Mukamel
J. Phys. Chem. B, DOI: 10.1021/jp408000k (2013).
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724."Ultrafast Nonlinear Spectroscopy with Spatially Confined Fields"
F. Schlosser, M. Schoth, S. Burger, F. Schmidt, A. Knorr, S. Mukamel, and M. Richter
AIP Conf. Proc. 1398, 94-96(2011).
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725."Photosynthetic Reaction Center as a Quantum Heat Engine"
K. Dorfman, D.V. Voronine, S. Mukamel and M.O. Scully
PNAS, DOI/10.1073/pnas.1212666110(2013).
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726."Quantum heat engines: A thermodynamic analysis of power and efficiency"
U. Harbola, S. Rahav and S. Mukamel
EPL, 99 , 50005(2012).
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727."Theory of Coherent Raman Scattering Microscopy"
S. Mukamel. Book Chapter 1, Edited by Ji-Xin Cheng and S. Xie
(CRC/Press/Taylor&Francis), (2012) ISBN: 978-1-4398-6765-5.
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728."Simulations of the 2-dimensional Electronic Spectroscopy of the Photosystem II Reaction Center"
K.L.M. Lewis, F.D. Fuller, J.A. Myers, C.F. Yocum, S. Mukamel, D. Abramavicius and J.P. Ogilvie
J. Phys. Chem. A, 117, 34-41 (2013).
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729."Background-free Nonlinear Microspectroscopy with Vibrational Molecular Interferometrypy"
E.T. Garbacik, J.P. Korterik, C. Otto, S. Mukamel, J.L. Herek, and H.L. Offerhaus
SPIE Proceedings,The International Society for Optical Engineering, 8226, 822605-822612(2011).
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730."2D Stimulated Resonance Raman Spectroscopy of Molecules with Broadband X-ray Pulses"
J. Biggs, Y. Zhang, D. Healion, and S. Mukamel
J. Chem. Phys. 136, 174117(2012).
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731."Monitoring the Folding of Trp-cage Peptide by Two-Dimensional Infrared (2DIR) Spectroscopy"
Z. Lai, N. Preketes, S. Mukamel and J. Wang
J. Phys.Chem.B, 117, 4661-4669(2013).
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732."Two Dimensional Near Ultraviolet (2DNUV) Spectroscopic Probe of Structural-dependent Exciton Dynamics in a Protein"
Jun Li, Deng, Dimitri Voronine, Shaul Mukamel, and Jun Jiang
J. Phys. Chem. B, 119, 1314-1322 (2015).
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733."Signatures of the Protein Folding Pathways in Two-dimensional Ultraviolet (2DUV) Spectroscopy"
J. Jiang , Z. Lai, J. Wang and S. Mukamel
J. Phys.Chem.Lett.,5, 1341-1346 (2014).
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734."QUANTUM CHEMSITRY A Lightning-Fast Change"
S. Mukamel
Nature Physics, 8, 179-180(2012).
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735."Quasiparticle Representation of Coherent Nonlinear Optical Signals of Multiexcitons"
O. Roslyak, B.P. Fingerhut , K. Bennett, and S. Mukamel
New J. of Physics, 15, 083049 (2013).
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736."Heat Fluctuations and Coherences in a Quantum Heat Engine"
S. Rahav, U. Harbola and S. Mukamel
Phys Rev. A. 86, 043843(2012).
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737."Coherent Manipulation of Quadrupole Biexcitons in Cuprous Oxide by 2D Femtosecond Spectroscopy"
O. Roslyak, U. Aparajita, J.L. Birman, and S. Mukamel
Phys. Status Solidi B-Basic Solid State Physics, 249, 435-447 (2012).
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738."Manipulating One-and Two-dimensional Stimulated X-ray Resonant Raman Signals in Molecules by Pulse Polarizations"
D. Healion, J. Biggs, and S. Mukamel
Phys. Rev. A (In Press,2012).
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739."Resolving the Electron Transfer Kinetics in the Bacterial Reaction Center by Pulse Polarized 2-D Photon Echo Spectroscopy"
B.P. Fingerhut, and S. Mukamel
J.Phys.Chem. Lett,1798-1805 (2012).
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741."Photon Coincidence Counting in Parametric Down Conversion; Interference of Field-Matter Quantum Pathways"
K. Dorfman and S. Mukamel
Phys. Rev. A, 86, 023805(2012).
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742."Dissecting two-dimensional ultraviolet spectra of amyloid fibrils into beta-strand and turn contribution"
J. Rodriguez and S. Mukamel
J. Phys Chem B, 116, 8830-8835(2012).
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743."Manipulation of Two-photon-induced Fluorescence Spectra of Chromophore Aggregates with Entangled Photons: A Simulation Study"
F. Schlawin, K. Dorfman, B.P. Fingerhut, and S. Mukamel.
Phys Rev A. 86, 023851(2012).
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744."N-H Stretching Modes of Adenosine Monomer in Solution Studied by Ultrafast Nonlinear Infrared Spectroscopy and Abinitio Calculations"
C. Greve, N. Preketes, R. Costard, B. Koeppe, H. Fidder, E. Nibbering, F. Temps, S. Mukamel, and T. Elsaesser
J.Phys.Chem. A, 116, pp 7636-7644(2012).
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745."Probing Ring Currents in Mg-Porphyrins by Pump-Probe Spectroscopy"
J. Rodriguez and S. Mukamel
J.Phys.Chem. A(2012).
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746."Nonlinear Spectroscopy with Time and Frequency Gated Photon Counting; A Superoperator Diagrammatic Approach"
K. Dorfman and S. Mukamel
Phys Rev A, 86, 013810(2012).
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747."Quasiparticle Approach to 2D-IR Spectra of Vibrational Excitons in Biomolecules; Molecular Dynamics vs. Stochastic Simulations"
C. Falvo, F. Sanda, and S. Mukamel
Book Chapter, M. Fayer, Editor (2012).
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748."Time Resolved Photoelectron Spectroscopy of Thioflavin T Photoisomerization; A simulation study"
H. Ren, B. Fingerhut, and S. Mukamel
J. Phys. Chem, 117, 6096-6104 (2013).
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749."Multidimensional Measures of Response and Fluctuations in Stochastic Dynamical Systems"
M. Kryvohuz and S. Mukamel
Phys Rev A,86,043818 (2012).
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750."Entangled Valence Electron-hole Dynamics Revealed by Stimulated Attosecond X-ray Raman Scattering"
D. Healion, Y. Zhang, J.D. Biggs, N. Govind, and S. Mukamel
J. Phys. Chem. Lett. 3(17) 2326-2331 (2012).
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751."Dissecting X-Ray Raman Resonances Using Four-Wave Mixing"
J. D. Biggs, Y. Zhang, D. Healion, N. Govind, and S. Mukamel
Proceedings of the XVIIIth International Conference on Ultrafast Phenomena In Ultrafast Phenomena XVI, Editors, M. Chergui, S. Cundiff, E. Riedle and R. Schoenlein, (Springer-Verlag, Berlin), 41,05040 (2013).
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752."Monitoring Molecular Chirality Exchange by Photon Echoes"
F. Sanda and S. Mukamel
Proceedings of the XVIIIth International Conference on Ultrafast Phenomena In Ultrafast Phenomena XVI, Editors, M. Chergui, S. Cundiff, E. Riedle and R. Schoenlein, (Springer-Verlag, Berlin), 41, 02025 (2013)..
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753."Nonlinear Spectroscopy of Chromophore Aggregates with Entangled Photon Pulses"
F. Schlawin, K.E. Dorfman, B.F. Fingerhut, and S. Mukamel
Proceedings of the XVIIIth International Conference on Ultrafast Phenomena In Ultrafast Phenomena XVI, Editors, M. Chergui, S. Cundiff, E. Riedle and R. Schoenlein, (Springer-Verlag, Berlin), 41, 12006(2013).
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754."Selective Assignment of Energy Transfer and Charge Separation Pathways in Reaction Centers by Pulse Polarized 2-D Photon Echo Spectroscopy"
B.P. Fingerhut, K. Bennett, O. Roslyak, and S. Mukamel
Proceedings of the XVIIIth International Conference on Ultrafast Phenomena In Ultrafast Phenomena XVI, Editors, M. Chergui, S. Cundiff, E. Riedle and R. Schoenlein, (Springer-Verlag, Berlin), 41,07014 (2013)).
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755."Ultrafast IR Pump-probe and 2D-IR Photon Echo Spectroscopy of Adenosine-thymidine Base Pairs"
C. Greve, N.K. Preketes, R. Costard, B. Koeppe, H. Fidder, E.T. Nibbering, F. Temps, S. Mukamel, and T. Elsaesser
Proceedings of the XVIIIth International Conference on Ultrafast Phenomena In Ultrafast Phenomena XVI, Editors, M. Chergui, S. Cundiff, E. Riedle and R. Schoenlein, (Springer-Verlag, Berlin), 41, 05019 (2013).
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756."Geometry Determination of Complexes in a Molecular Liquid Mixture Using EVV 2DIR Spectroscopy with a Vibrational Transition Density Cube Method"
R. Guo, S. Mukamel, and D.R. Klug
PCCP, DOI: 10.1039/C2CP42593A(2012).
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757."Multidimensional Attosecond Resonant X-ray Spectroscopy of Molecules; Lessons from the Optical Regime"
S. Mukamel,D. Healion, Y. Zhang, and J.D. Biggs
Ann Rev Phys Chem, 64, 101-127 (2013).
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758."2D Optical Photon Echo Spectroscopy of Self Assembled Quantum Dot"
B. Fingerhut, M. Richter, J.W. Luo, A. Zunger, and S. Mukamel
Annalen der Physik, 525, 31-42 (2013).
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759."Two dimensional stimulated ultraviolet resonance Raman spectra of tyrosine and tryptophan; A simulation study"
H. Ren, J.D. Biggs, and S. Mukamel
J. Raman Spectrosc. 44, 544-559 (2013).
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760."Simulations of Two-dimensional Infrared and Resonance Raman Spectra of Photoactive Yellow Protein"
N.K. Preketes, J.D. Biggs, H. Ren, I. Andricioaei and S. Mukamel
Chemical Physics, 422, 63-72 (2013).
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761."Using Localized Double Quantum Coherence Spectroscopy to Reconstruct the Two Exciton Wave Function of Coupled Quantum Emitters"
F. Schlosser, A. Knorr, S. Mukamel and M. Richter
New Journal of Physics special issue, 15, 025004(2013).
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762."Broadband Infrared and Raman Probes of Excited-state Vibrational Molecular Dynamics; Simulation Protocols Based on Loop Diagrams"
K.E. Dorfman, B.P. Fingerhut, and S. Mukamel
PCCP , 15, 12348-12359, DOI: 10.1039/C3CP51117K (2013.
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763."Suppression of Population transport and Control of Exciton Distributions by Entangled Photons"
F. Schlawin, K.E. Dorfman, B.P. Fingerhut, and S. Mukamel
Nature Communications, 4:1782:DOI:10.1038/ncomms2802(2013).
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764."Core and Valence Excitations in Resonant X-ray Spectroscopy Using Restricted Excitation Window Time-dependent Density Functional Theory (REW-TDDFT)"
Y. Zhang, J.D. Biggs, D. Healion, N. Govind, and S. Mukamel
J. Chem. Phys. 137, 194306 (2012).
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765."Loss and Gain Signals in Broad-band Stimulated-Raman Spectra; Theoretical Analysis"
U. Harbola, S. Umapathy, and S. Mukamel
Phys Rev A, 88, 011801 (2013).
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767."Study of the D-Crystallin Protein using Two-Dimensional Infrared (2DIR) Spectroscopy: Experiment and Simulation"
A.R. Lam, S. Moran, N. Preketes, M.T. Zanni, and S. Mukamel
JPCB, 117, 15436-43 DOI: 10.1021/jp405159v (2013).
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768."Zeeman Shift of Two-Dimensional Optical Signals of Mg-Porphyrin Dimers with Circularly Polarized Beams"
J. Rodriguez and S. Mukamel
JCP, 137(2012).
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769."N-H Stretching Excitations in Adenosine-Thymidine Base Pairs in Solution: Pair Geometries, Infrared Line Shapes and Ultrafast Vibrational Dynamics"
C. Greve, N. Preketes, H. Fidder, R. Costard, B. Koeppe, I. Heisler, S. Mukamel, F. Temps, E. T. J. Nibbering, and T. Elsaesser
J. Phys. Chem A, 117, 594-606 (2013).
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771."Controlling Stimulated Coherent Spectroscopy and Microscopy by a Position-dependent Phase"
C.Y. Chung, J. Hsu, S. Mukamel, and E. O. Potma
Phys Rev A, 87, 033833 (2013).
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772."Two-dimensional Infrared (2DIR) Spectroscopy of the Peptide Beta3s Folding"
Z. Lai, N. Preketes, J. Jiang, S. Mukamel, and J. Wang
J. Phys. Chem. Lett, 4, 1913-1917 (2013).
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773."Multidimensional X-ray Spectroscopy of Valence and Core Excitations in Cysteine"
J.D. Biggs, Y. Zhang, D. Healion, and S. Mukamel
J. Chem. Phys. 138, 144303 (2013).
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774."Collective Resonances in ; a QED Study"
K.E. Dorfman and S. Mukamel
Phys. Rev.A , 87, 063831 (2013).
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775."Double Core-Excitations in Formamide Can Be Probed by X-ray Double-Quantum Coherence Spectroscopy"
Y. Zhang, D. Healion, J.D. Biggs, and S. Mukamel
J. Chem. Phys. 138, 144301 (2013).
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777."Nonlinear Light Scattering in Molecules Triggered by an Impulsive X-ray Raman Process"
K.E. Dorfman, K. Bennett, Y. Zhang and S. Mukamel
Phys Rev. A, 87, 053826 (2013).
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778."Optical Multidimensional Coherent Spectroscopy"
S. Cundiff and S. Mukamel
Physics Today(July 2013).
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779."Tight-binding model of the Photosystem II Reaction Center: application to the 2-dimensional Electronic Spectroscopy"
A. Gelzinis, L. Valkunas, F.D. Fuller, J.P. Ogilvie, S. Mukamel, and D. Abramavicius
New J. Phys, 15, 075013 (2013).
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780."Monitoring Non-adiabatic Dynamics of the RNA Base Uracil by UV-Pump-IR-Probe Spectroscopy"
B.P. Fingerhut, K.E. Dorfman, and S. Mukamel
J. Phys. Chem. Lett, 4, 1933-1942 (2013).
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781."Multidimensional Spectroscopy with Entangled Light: Loop vs. Ladder Delay Scanning Protocols"
K.E. Dorfman and S. Mukamel
New J. Phys. 16, 033013 (2014).
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782."Nonlinear Transmission Spectroscopy with Dual Frequency Combs"
R. Glenn and S. Mukamel
Phys Rev. A, 90, 023804 (2014).
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783."Two-Dimensional Stimulated Resonance Raman Spectroscopy Study of the Trp-cage Peptide Folding"
H. Ren, Z. Lai, J.D. Biggs, J. Wang, and S. Mukamel
PCCP , 15, 19457-19464 (2013).
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784."Time-Resolved Broadband Raman Spectroscopies; A Unified Six-wave mixing Representation"
K.E. Dorfman, B.P. Fingerhut, and S. Mukamel
J. Chem. Phys. 139, 124113 (2013).
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785."Photon Statistics of Intense Entangled Photon Pulses"
F. Schlawin and S, Mukamel
J. Phys. B. At. Mol. Opt. Phys., 46, 175502 (2013).
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786."Watching Energy Transfer in Metalloporphyrin Heterodimers Using X-ray Raman Spectroscopy"
J.D. Biggs, Y. Zhang, D. Healion, and S. Mukamel
PNAS, 110, 15597-15601 (2013).
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787."Coherent Control of Linear Signals; Frequency-domain Analysis"
S. Mukamel
J. Chem. Phys. 139, 164113 (2013).
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788."Indistinguishability and Correlations of Photons Generated by Quantum Emitters Undergoing Spectral Diffusion"
K.E. Dorfman and S. Mukamel
Scientific Reports, 4, 3996 (2014).
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789."Understanding Excitation Energy Transfer in Metalloporphyrin Heterodimers with Different Linkers, Bonding Structures, and Geometries through Stimulated X-Ray Raman Spectroscopy"
Y. Zhang, J.D. Biggs, and S. Mukamel
J. Mod. Optics, DOI: 10.1080/09500340.2014.899734 (2014).
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791."Ab-initio Simulations of Two-dimensional Electronic Spectra: the SOS//QM/MM Approach"
Ivan Rivalta, Artur Nenov, Giulio Cerullo, Shaul Mukamel, Marco Garavelli
International Journal of Quantum Chemistry, DOI: 10.1002/qua.24511 (2013).
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792."Frequency-domain stimulated and spontaneous light emission signals at molecular junctions"
U. Harbola, B. Agarwalla, and S. Mukamel
JCP, 141, 074107 (2014).
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793.Comment on "Coherence and Uncertainty in Nanostructured Photovoltaics"
S. Mukamel
J. Phys. Chem A, DOI: 10.1021/jp4071086 (2013).
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794.Matter Correlations Induced by Coupling to Quantum Light"
F. Schlawin and S. Mukamel
Phys Rev A, 89,013830 (2014).
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795."Multiple Core and Vibronic Coupling Effects in attosecond Stimulated X-ray Raman Spectroscopy"
Weijie Hua, Jason Biggs, Yu Zhang, Daniel Healion, Hao Ren, and Shaul Mukamel
J. Chem. Theory and Computation. 9, 5479-5489 (2013).
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796."Two-dimensional X-ray Correlation Spectroscopy of Remote Core States"
D. Healion, Y. Zhang, J.D. Biggs, W.Hua, and S. Mukamel
Structural Dynamics , 1, 014101 (2014).
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797."Nonlinear Response Theory in Chemical Kinetics"
M. Kryvohuz and S. Mukamel
J. Chem. Phys., 140, 034111 (2014).
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798."Two-photon Spectroscopy of Excitons with Entangled Photons"
F. Schlawin and S. Mukamel
J. Chem Phys, 139, 244110 (2013).
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799."Disentangling Peptide Configurations via Two-dimensional Electronic Spectroscopy: Ab Initio Simulations Beyond the Exciton Hamiltonian"
A. Nenov, I. Rivalta, G. Cerullo, S. Mukamel, and M. Garavelli
J. Phys. Chem. Lett., 5, 767-771 (2014).
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800."Cascading and Local-Field Effects in Non-Linear Optics Revisited; A Quantum-Field Picture Based on Exchange of Photons"
K. Bennett and S. Mukamel
JCP, 140,034111 (2014).
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